A mixture of fragmented DNA was electrophoresed in agarose gel. After staining the gel with ethidium bromide, no DNA bands were observed

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asked Dec 8, 2017 in Biology by sforrest072 (157,439 points) 60 409 936

A mixture of fragmented DNA was electrophoresed in agarose gel. After staining the gel with ethidium bromide, no DNA bands were observed. What could be the reason?

1 Answer

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answered Dec 8, 2017 by mdsamim (213,225 points) 5 10 15
selected Dec 8, 2017 by sforrest072
 
Best answer

The reasons are as follows:

 (i) DNA sample that was loaded on the gel may have got contaminated with nuclease (exo-or endo-or both) and completely degraded. 

 (ii) Electrodes were put in opposite orientation in the gel assembly that is anode towards the wells (where DNA sample is loaded). Since DNA molecules are negatively charged, they move towards anode and hence move out of the gel instead of moving into the matrix of gel.  

(iii) Ethidium bromide was not added at all or was not added in sufficient concentration and DNA was not visible

 

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